PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG370600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 315aa MW: 34667.8 Da PI: 4.9167

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG370600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.3e-10	150	193	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+++ f++L +++P a +K +K++ L +++Y+++L+ Pavir.9NG370600.1.p 150 LGERRRREKMHLQFATLASIIPDA-----TKRDKVSLLGSTIDYVHHLR 193 56********************.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.49E-9	136	197	No hit	No description
PROSITE profile	PS50888	13.611	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	147	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-13	148	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-8	148	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MNSSSANHQW LEELENEDLG ELDFIDPLTM QQLAESLADE LSDQPTQEQQ VQLDQRQQPM 60 YPTGFSFLGD ISKSYVVAEG FPTTTRAISV GGGDSMFSFT DGMSKQLSFS SPERKQERDA 120 SVTAGRLGAP SPVETKGRRR ASSSVHEHVL GERRRREKMH LQFATLASII PDATKRDKVS 180 LLGSTIDYVH HLRSRLKALQ DEQFQSSGST AESPPLDARC CIGSEDDGEA SQKIEADVRG 240 KTVLLRVVCR EKKGVLIMVL KELEKQGLSI TSTNVLQLAE SLLNITVTAQ IEDGSYSTAV 300 ELVNNLNSAL RNFY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	155	RRRASSSVHEHVLGERRRR
2	151	156	ERRRRE
3	152	157	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008659077.1	1e-127	PREDICTED: transcription factor bHLH18-like
TrEMBL	K4AKH0	1e-143	K4AKH0_SETIT; Uncharacterized protein
STRING	Si039393m	1e-143	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG370600.1.p